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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_13876368_13876627_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13876368 - 13876627
Intron Length:
260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGGCAC
5'SS Class:
major
3'SS Sequence:
TACCTCAATGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCTTTATTACCT
Flanking Amino Acid:
AVLRHKLCLLSNTMKELENL
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1
58.4
40.5
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
65.2
0.34
0.9
59.8
35.4
Minor 5ss
37.3
-1.4
3.3
46.7
43.4
Minor BPS
59.9
0.39
1.9
80.31
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015011
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015640
13875026 - 13879347
4322