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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_13876691_13877431_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13876691 - 13877431
Intron Length:
741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACCAT
5'SS Class:
major
3'SS Sequence:
CTCTGTTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
GAGCTCTAAACC
Flanking Amino Acid:
AAVKMARLSEFRTSPSSLSH
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
71.2
40.6
Major BPS
73
0.57
1
73.6
28.6
Major PPT
81.7
0.71
0.8
75.6
33
Minor 5ss
38.9
-1.2
3.3
55.8
48.4
Minor BPS
50.5
-0
1.7
57.39
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015011
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015640
13875026 - 13879347
4322