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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_13895128_13896833_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13895128 - 13896833
Intron Length:
1706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTTAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TATTTCTTATTT
Flanking Amino Acid:
VIGRHAYGDQYRATDFVVPG
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
0.9
71.2
34.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
76.4
0.59
0.9
73.4
35.7
Minor 5ss
30.8
-2.2
2.9
35.8
34.5
Minor BPS
70.7
0.73
1.5
84.59
36.2

Associated Gene:

Gene:
IDH1
Ensembl Gene ID:
ENSAPLG00000014810
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015457
13889280 - 13898856
9577