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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_13905226_13911182_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13905226 - 13911182
Intron Length:
5957

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAATTTCA
5'SS Class:
major
3'SS Sequence:
CCTTCCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAT
U12 Branch Point Sequence:
TGTCATGGAAGA
Flanking Amino Acid:
ELQRRASTALDNRRKVEPPL
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.1
70.5
36.3
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
84.7
0.78
0.7
76.3
32.3
Minor 5ss
40.1
-1.1
2.7
42.5
44.2
Minor BPS
38.3
-0.8
2.2
51.34
40

Associated Gene:

Gene:
PIKFYVE
Ensembl Gene ID:
ENSAPLG00000014164
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014835
13903380 - 13959588
56209