About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_13917981_13919964_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13917981 - 13919964
Intron Length:
1984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATACTAA
5'SS Class:
major
3'SS Sequence:
CCTCGTACTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAA
U12 Branch Point Sequence:
CACACTTCAATC
Flanking Amino Acid:
EDAGKSPARNRSASITNLSL
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
66.2
35.7
Major BPS
69.4
0.48
1
71.6
33.8
Major PPT
73.8
0.54
0.9
69.7
35.3
Minor 5ss
48.6
-0.1
2.6
63.9
47.7
Minor BPS
48.5
-0.1
1.6
52.01
39.7

Associated Gene:

Gene:
PIKFYVE
Ensembl Gene ID:
ENSAPLG00000014164
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014835
13903380 - 13959588
56209