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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_13926625_13931820_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13926625 - 13931820
Intron Length:
5196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAGGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGCCTAT
U12 Branch Point Sequence:
CTCCGCCTATCT
Flanking Amino Acid:
HVPPHPADQKEYLNPDNGGQ
Intron Amino Acid Position:
547

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
71.6
38.5
Major BPS
46.5
-0.2
1.3
41.8
41
Major PPT
93.5
0.98
0.6
92.3
18.1
Minor 5ss
38.2
-1.3
3.4
56.2
48
Minor BPS
42.8
-0.4
2.2
61.68
47.8

Associated Gene:

Gene:
PIKFYVE
Ensembl Gene ID:
ENSAPLG00000014164
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014835
13903380 - 13959588
56209