Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_13934492_13935766_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13934492 - 13935766

Intron Length:

1275

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTTTC

5'SS Class:

strong_major

3'SS Sequence:

TTTGCTCTGTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAG

U12 Branch Point Sequence:

ACAGTTCTAAGT

Flanking Amino Acid:

DIRQFVHIKKIPGGKKFDSM

Intron Amino Acid Position:

672

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.5

0.88

0.9

85.1

25.6

Major BPS

70.6

0.51

1.5

77.9

34.9

Major PPT

73.6

0.53

36.7

Minor 5ss

46.5

-0.4

2.7

61.9

36.7

Minor BPS

42.9

-0.4

1.9

54.59

41.7

Associated Gene:

Gene:

PIKFYVE

Ensembl Gene ID:

ENSAPLG00000014164

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014835

13903380 - 13959588

56209