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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_13938627_13939687_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13938627 - 13939687
Intron Length:
1061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
GTCATCTTAACT
Flanking Amino Acid:
FYMQVFQLPNDQTKTLMFFE
Intron Amino Acid Position:
822

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
79.7
30.2
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
83.4
0.75
0.7
78.5
29.5
Minor 5ss
30.1
-2.3
2.6
34
41.5
Minor BPS
72.7
0.79
1.3
81.12
40.4

Associated Gene:

Gene:
PIKFYVE
Ensembl Gene ID:
ENSAPLG00000014164
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014835
13903380 - 13959588
56209