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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_13943080_13944752_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13943080 - 13944752
Intron Length:
1673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATCAT
U12 Branch Point Sequence:
TTTCTCTTTAAG
Flanking Amino Acid:
CSYLFLFLKARPSYQCPSMF
Intron Amino Acid Position:
1271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
1.1
80
33
Major BPS
73
0.57
1.2
74
41.2
Major PPT
78.9
0.65
1
83.2
25.7
Minor 5ss
31.7
-2.1
3
42.5
44.2
Minor BPS
54.5
-0
1.8
65.94
41.3

Associated Gene:

Gene:
PIKFYVE
Ensembl Gene ID:
ENSAPLG00000014164
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014835
13903380 - 13959588
56209