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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_13948412_13949375_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13948412 - 13949375
Intron Length:
964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTAGCA
5'SS Class:
major
3'SS Sequence:
ATATTCTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
ATGGCATCAACA
Flanking Amino Acid:
GRLRQGEDSKISSMDASPRN
Intron Amino Acid Position:
1545

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
61.8
37
Major BPS
76.2
0.65
1
67
39.8
Major PPT
73.9
0.54
0.9
66.6
39.8
Minor 5ss
29.7
-2.3
3.4
40.1
45.4
Minor BPS
49.5
-0
1.9
63.39
42.6

Associated Gene:

Gene:
PIKFYVE
Ensembl Gene ID:
ENSAPLG00000014164
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014835
13903380 - 13959588
56209