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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_13950379_13951783_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13950379 - 13951783
Intron Length:
1405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
TGTTTCCATTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
CTCTCCCTATTT
Flanking Amino Acid:
GNNYNPIPFPFDPDKHYLMY
Intron Amino Acid Position:
1653

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
81.8
31
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
76.6
0.6
0.9
75.1
35
Minor 5ss
40
-1.1
2.9
57.3
41.2
Minor BPS
52.1
0.14
2
72.09
45.3

Associated Gene:

Gene:
PIKFYVE
Ensembl Gene ID:
ENSAPLG00000014164
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014835
13903380 - 13959588
56209