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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_13953222_13954052_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13953222 - 13954052
Intron Length:
831

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGACAA
5'SS Class:
major
3'SS Sequence:
CTTTTCACTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ACTTCTTTATTC
Flanking Amino Acid:
PSNRTAEPEQPKKSSGVLSF
Intron Amino Acid Position:
1730

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.3
67.8
39.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
79.7
0.67
0.8
74.9
28.7
Minor 5ss
32.7
-2
3.1
38.6
39.8
Minor BPS
62.4
0.37
1.6
68
38.4

Associated Gene:

Gene:
PIKFYVE
Ensembl Gene ID:
ENSAPLG00000014164
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014835
13903380 - 13959588
56209