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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_13971229_13971980_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13971229 - 13971980
Intron Length:
752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGTTTT
5'SS Class:
major
3'SS Sequence:
TATTTCATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTCTAATTAACA
Flanking Amino Acid:
FAPEFEILARAVKGKVKAGK
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
78.8
38.3
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
81
0.7
0.8
79.1
33.8
Minor 5ss
44.3
-0.6
3.2
57.9
46.7
Minor BPS
65.3
0.48
1.8
77.78
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028706
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019986
13969761 - 13976776
7016