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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_13972129_13972514_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13972129 - 13972514
Intron Length:
386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TTGATTATGACT
Flanking Amino Acid:
DSYSLRGWALGYLPQVSVDL
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
78.4
32.4
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
81
0.7
0.7
79.8
25.6
Minor 5ss
40.1
-1.1
2.8
44.3
43.6
Minor BPS
51
0.11
1.6
71.93
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028706
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019986
13969761 - 13976776
7016