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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_13986413_13987440_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13986413 - 13987440
Intron Length:
1028

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTGATCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTCTCTTGATCT
Flanking Amino Acid:
EIITLDRGEFDAAVNSGELW
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
80.5
34.9
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
72.6
0.51
0.9
65.9
40
Minor 5ss
49.9
-0
2.8
70.4
41.2
Minor BPS
61.6
0.44
1.7
80.48
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013405
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014014
13984675 - 13991584
6910