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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_13989469_13991386_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13989469 - 13991386
Intron Length:
1918

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTAAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTCCTTAAAT
Flanking Amino Acid:
ALKLHPDKNQNDPNAHENFL
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.7
1.12
0.6
91.3
19.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
72.6
0.51
0.9
70.5
33.9
Minor 5ss
44.8
-0.6
2.8
61.1
43.8
Minor BPS
90.6
1.35
1
101.7
23.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013405
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014014
13984675 - 13991584
6910