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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1406378_1413748_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1406378 - 1413748
Intron Length:
7371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTAGC
5'SS Class:
major
3'SS Sequence:
TGTGGTTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TGTTTTCTAACT
Flanking Amino Acid:
IYKTEDVNALDAEKRTPLHV
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
70.6
39.7
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
79.5
0.66
0.9
72.9
42.2
Minor 5ss
42.3
-0.8
2.5
51.2
40.6
Minor BPS
67.4
0.62
1.6
84.98
35.2

Associated Gene:

Gene:
ANKRD44
Ensembl Gene ID:
ENSAPLG00000002803
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028198
1355915 - 1480169
124255
ENSAPLT00000023352
1355915 - 1478901
122987
ENSAPLT00000019319
1365255 - 1478901
113647
ENSAPLT00000002945
1355915 - 1480169
124255
ENSAPLT00000040279
1381533 - 1480169
98637