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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_14153241_14162975_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14153241 - 14162975
Intron Length:
9735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CTTTTATTAATT
Flanking Amino Acid:
VLEAVYIDETRRLLDTEDEL
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.8
81.8
38.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
89.4
0.89
0.7
89.2
27.3
Minor 5ss
37.8
-1.4
3
49.5
46.7
Minor BPS
69.9
0.7
1.6
84.39
36.6

Associated Gene:

Gene:
PDE1A
Ensembl Gene ID:
ENSAPLG00000012827
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013394
14055775 - 14186975
131201