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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_14163159_14163594_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14163159 - 14163594
Intron Length:
436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
AATGGCTGAACA
Flanking Amino Acid:
HAVQAGIFVERMYRRTSSMV
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
84.1
26.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
89.6
0.89
0.6
89.2
19.8
Minor 5ss
30.9
-2.2
3.5
46.6
48.7
Minor BPS
49.8
-0
2
63.98
42

Associated Gene:

Gene:
PDE1A
Ensembl Gene ID:
ENSAPLG00000012827
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013394
14055775 - 14186975
131201