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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_14166315_14171119_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14166315 - 14171119
Intron Length:
4805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTACTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTTACT
Flanking Amino Acid:
HYIMIHTGIMHWLTELEILA
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
100
1.24
0.5
100
0
Major PPT
76.2
0.59
0.9
70.8
39.5
Minor 5ss
35.3
-1.7
3.1
46.4
43
Minor BPS
72.3
0.78
1.9
93.91
33.3

Associated Gene:

Gene:
PDE1A
Ensembl Gene ID:
ENSAPLG00000012827
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013394
14055775 - 14186975
131201