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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_14179327_14183215_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14179327 - 14183215
Intron Length:
3889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCCATTT
5'SS Class:
major
3'SS Sequence:
TTGTTGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ATAACATTAAAC
Flanking Amino Acid:
MALMEEFFRQGDKEAALGLQ
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.7
0.39
1.2
68.7
38.8
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
85.6
0.8
0.9
80.6
37
Minor 5ss
42.9
-0.8
3.4
64.9
46.4
Minor BPS
55.1
0.14
1.7
65.82
38.5

Associated Gene:

Gene:
PDE1A
Ensembl Gene ID:
ENSAPLG00000012827
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013394
14055775 - 14186975
131201