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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_14184992_14186782_F

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
14184992 - 14186782
Intron Length:
1791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAATA
5'SS Class:
strong_major
3'SS Sequence:
GCAGCCTGAATAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
GCAGCCTGAATA
Flanking Amino Acid:
KSESPAFRTPSLGAVSNAET
Intron Amino Acid Position:
460

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
49.5
-0
1
43.1
37.3
Minor 5ss
43.1
-0.8
2.9
57.4
46.9
Minor BPS
53
0.09
1.6
57.77
41.8

Associated Gene:

Gene:
PDE1A
Ensembl Gene ID:
ENSAPLG00000012827
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013394
14055775 - 14186975
131201