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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_14239404_14259868_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14239404 - 14259868
Intron Length:
20465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
CTTTTTCTATCT
Flanking Amino Acid:
LVIMNDHVPPEKDEKRTNIS
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
75.2
36.3
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
84.6
0.78
0.7
77.6
31.1
Minor 5ss
33.5
-1.9
3.1
36.8
40.4
Minor BPS
51.9
0.14
1.9
75.57
41.7

Associated Gene:

Gene:
PPP1R1C
Ensembl Gene ID:
ENSAPLG00000028661
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028956
14237266 - 14262269
25004