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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_14274245_14280440_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14274245 - 14280440
Intron Length:
6196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TAATCCCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
ATTCCTCTAATC
Flanking Amino Acid:
QEELQQVIREIKESIVGEIR
Intron Amino Acid Position:
1162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
78.1
0.63
0.9
74.4
35.8
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
59.8
0.29
1.6
71.03
33.8

Associated Gene:

Gene:
ITPRID2
Ensembl Gene ID:
ENSAPLG00000012488
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047649
14274134 - 14295967
21834
ENSAPLT00000013033
14274134 - 14314050
39917