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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_14280831_14280872_R

Intron Information:

Intron Rank:
14
Intron Class:
minor
Intron Phase:
0
Intron Coordinates:
14280831 - 14280872
Intron Length:
42

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTTTCTTTT
5'SS Class:
minor
3'SS Sequence:
ACTTATGCGAGAG|C
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CTTTTCTGAATC
Flanking Amino Acid:
DQLRSLLFRSQSFLKSELGL
Intron Amino Acid Position:
1032

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
47.7
-0.1
1.3
56.8
42.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
46.5
-0.2
1.7
49.9
43.2
Minor 5ss
74.6
0.83
1.7
86.7
28.2
Minor BPS
68.3
0.55
1.4
74.51
36.5

Associated Gene:

Gene:
ITPRID2
Ensembl Gene ID:
ENSAPLG00000012488
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013033
14274134 - 14314050
39917