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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_14280852_14281576_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14280852 - 14281576
Intron Length:
725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TCTGAATCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTTTCTGAATC
Flanking Amino Acid:
CPSPLNVIEPVSELMREQSF
Intron Amino Acid Position:
554

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
70.3
40.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
70.7
0.47
0.9
67
39.2
Minor 5ss
38.3
-1.3
2.8
51.5
39
Minor BPS
68.3
0.55
1.4
74.51
36.5

Associated Gene:

Gene:
ITPRID2
Ensembl Gene ID:
ENSAPLG00000012488
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047649
14274134 - 14295967
21834