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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1438999_1441364_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1438999 - 1441364
Intron Length:
2366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TATTTTTTACTT
Flanking Amino Acid:
RTCLHAAAAGGNVECIKLLQ
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
77.8
38.7
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
89.9
0.9
0.6
88.1
21.8
Minor 5ss
31.6
-2.1
2.7
34.1
41.4
Minor BPS
65
0.55
1.5
80
36.6

Associated Gene:

Gene:
ANKRD44
Ensembl Gene ID:
ENSAPLG00000002803
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023352
1355915 - 1478901
122987
ENSAPLT00000019319
1365255 - 1478901
113647
ENSAPLT00000002945
1355915 - 1480169
124255
ENSAPLT00000040279
1381533 - 1480169
98637
ENSAPLT00000028198
1355915 - 1480169
124255