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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_14409800_14421417_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14409800 - 14421417
Intron Length:
11618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
CTTTTGATAACA
Flanking Amino Acid:
WFRHLKEILNVTEYEGHALS
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
77.1
37.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
80.7
0.69
0.8
76
32.4
Minor 5ss
42.2
-0.9
2.9
56.1
42.2
Minor BPS
50.7
0.02
2.3
71.45
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012428
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036094
14386579 - 14425421
38843