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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_14415678_14421417_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14415678 - 14421417
Intron Length:
5740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
CTTTTGATAACA
Flanking Amino Acid:
KLADIKTDVTVTEYEGHALS
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
82.3
32.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
80.7
0.69
0.8
76
32.4
Minor 5ss
40.5
-1.1
2.8
53
44.2
Minor BPS
50.7
0.02
2.3
71.45
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012428
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012946
14386579 - 14425421
38843