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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_14433123_14436270_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14433123 - 14436270
Intron Length:
3148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
GTCTGCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATTAATTTATTT
Flanking Amino Acid:
MAPRGLAPNTRLNNGSMALI
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1.2
78
38.6
Major BPS
83
0.82
0.8
82
24.9
Major PPT
80.3
0.68
0.9
76.7
37.5
Minor 5ss
30.5
-2.2
2.5
34.7
40.9
Minor BPS
51.2
0.11
1.8
71.96
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026156
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027842
14433067 - 14438603
5537