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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_14437778_14438521_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14437778 - 14438521
Intron Length:
744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGGTGA
5'SS Class:
strong_major
3'SS Sequence:
CTTCACTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
ATTTCTTCACTT
Flanking Amino Acid:
LMEEASEVHVRVHPQLINLY
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
67
41
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
78.2
0.63
0.8
71.8
32.4
Minor 5ss
36.6
-1.5
3.3
47.2
48.2
Minor BPS
58
0.33
1.8
78.23
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026156
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027842
14433067 - 14438603
5537