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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_14444574_14445940_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14444574 - 14445940
Intron Length:
1367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGTCT
5'SS Class:
strong_major
3'SS Sequence:
CTCCCCTCTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TCAGTTGTAATC
Flanking Amino Acid:
FFSKAAKRHMYCMKNDSLCL
Intron Amino Acid Position:
859

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
74.8
35.7
Major BPS
78.6
0.71
1
78.6
31
Major PPT
78.5
0.64
0.7
71.8
26.4
Minor 5ss
39.5
-1.2
3.3
53.8
44.4
Minor BPS
45.5
-0.3
2
53.34
39.6

Associated Gene:

Gene:
ITGA4
Ensembl Gene ID:
ENSAPLG00000011547
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012183
14442592 - 14477358
34767