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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_14447693_14448815_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14447693 - 14448815
Intron Length:
1123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TGAACCGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
AATTTCTGAACC
Flanking Amino Acid:
LKYEIELNAHGFVTPASFVY
Intron Amino Acid Position:
752

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
74.1
38.3
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
63.1
0.3
1
58.7
42.6
Minor 5ss
33.1
-1.9
2.8
32.9
41.9
Minor BPS
69.7
0.6
1.4
74.97
34.7

Associated Gene:

Gene:
ITGA4
Ensembl Gene ID:
ENSAPLG00000011547
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012183
14442592 - 14477358
34767