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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_14448903_14449759_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14448903 - 14449759
Intron Length:
857

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCATG
5'SS Class:
strong_major
3'SS Sequence:
CCGTTTTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTATATTAATA
Flanking Amino Acid:
YSYVDQKSKVSKNEDENMLL
Intron Amino Acid Position:
723

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
74.4
41.9
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
80.2
0.68
0.8
75.5
33
Minor 5ss
49.1
-0.1
2.5
65.5
45.8
Minor BPS
65.5
0.48
1.6
76.98
33.6

Associated Gene:

Gene:
ITGA4
Ensembl Gene ID:
ENSAPLG00000011547
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012183
14442592 - 14477358
34767