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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_14454628_14457248_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14454628 - 14457248
Intron Length:
2621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAATGTAA
5'SS Class:
major
3'SS Sequence:
CCAATTTTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
ATATGATTAACT
Flanking Amino Acid:
ACNDHPAFMRKDVRDILTPI
Intron Amino Acid Position:
563

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
64.7
37.7
Major BPS
75.8
0.64
1
65.8
41
Major PPT
69.4
0.44
0.9
64.1
36.4
Minor 5ss
35.7
-1.6
3.2
38.1
46.9
Minor BPS
60.6
0.41
2
80.84
40.3

Associated Gene:

Gene:
ITGA4
Ensembl Gene ID:
ENSAPLG00000011547
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012183
14442592 - 14477358
34767