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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_14457404_14459066_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14457404 - 14459066
Intron Length:
1663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATTTTTATAACT
Flanking Amino Acid:
YTGREVPDYIVLFYNLSVDV
Intron Amino Acid Position:
511

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
71.1
35.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
92.9
0.96
0.7
88.5
28.1
Minor 5ss
44.3
-0.6
2.9
55.7
43.3
Minor BPS
69.7
0.7
1.5
86.83
32.2

Associated Gene:

Gene:
ITGA4
Ensembl Gene ID:
ENSAPLG00000011547
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012183
14442592 - 14477358
34767