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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_14459616_14460933_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14459616 - 14460933
Intron Length:
1318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCATACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATA
Flanking Amino Acid:
GIDADNNGYQDVAVGAFLSD
Intron Amino Acid Position:
444

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
78.7
25
Major BPS
100
1.24
0.5
100
0
Major PPT
89
0.88
0.8
85
28.8
Minor 5ss
33.4
-1.9
2.9
39.9
46.1
Minor BPS
64.7
0.46
1.7
78
33.3

Associated Gene:

Gene:
ITGA4
Ensembl Gene ID:
ENSAPLG00000011547
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012183
14442592 - 14477358
34767