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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_14461025_14461390_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
14461025 - 14461390
Intron Length:
366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTTT
5'SS Class:
weak_major
3'SS Sequence:
TTTTCCTCCGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTACAAGAATA
Flanking Amino Acid:
EDGITPTFSQRIQGHQVSNS
Intron Amino Acid Position:
414

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
80.5
35
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.4
0.71
0.7
77.9
24
Minor 5ss
70.5
0.69
2.2
81.8
38.5
Minor BPS
47.8
-0.1
2
67.85
37.8

Associated Gene:

Gene:
ITGA4
Ensembl Gene ID:
ENSAPLG00000011547
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012183
14442592 - 14477358
34767