About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_14461486_14463661_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14461486 - 14463661
Intron Length:
2176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TTACTGTTAAAT
Flanking Amino Acid:
LGDIDNDGFEDVAIGAPQED
Intron Amino Acid Position:
382

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
89.5
23.2
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
84.9
0.79
0.8
80.2
32
Minor 5ss
38.7
-1.3
2.9
50.9
45.5
Minor BPS
52.2
0.15
2.1
75.39
40.8

Associated Gene:

Gene:
ITGA4
Ensembl Gene ID:
ENSAPLG00000011547
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012183
14442592 - 14477358
34767