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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1447182_1448190_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1447182 - 1448190
Intron Length:
1009

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTTTG
5'SS Class:
major
3'SS Sequence:
GAATTGTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
AACTCATGAATT
Flanking Amino Acid:
ASEMKEKEAALCLEFLLQND
Intron Amino Acid Position:
514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.1
73.5
37.9
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
68.4
0.41
1
60.9
44.3
Minor 5ss
46.4
-0.4
2.8
64.2
41.3
Minor BPS
54.5
0.22
1.7
70.02
40.6

Associated Gene:

Gene:
ANKRD44
Ensembl Gene ID:
ENSAPLG00000002803
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023352
1355915 - 1478901
122987
ENSAPLT00000019319
1365255 - 1478901
113647
ENSAPLT00000002945
1355915 - 1480169
124255
ENSAPLT00000040279
1381533 - 1480169
98637
ENSAPLT00000028198
1355915 - 1480169
124255