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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_14531367_14567945_R

Intron Information:

Intron Rank:
142767
Intron Class:
major
Intron Phase:
Intron Coordinates:
14531367 - 14567945
Intron Length:
36579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTGCCTTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
73.6
30.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
88.9
0.88
0.7
81.3
35.7
Minor 5ss
27.7
-2.6
3
31.2
36.9
Minor BPS
61
0.43
1.6
76.99
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024097
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020549
14531249 - 14589440
58192