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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_14584923_14589042_R

Intron Information:

Intron Rank:
142770
Intron Class:
major
Intron Phase:
Intron Coordinates:
14584923 - 14589042
Intron Length:
4120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGACA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTGATCTTAAGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
74.1
36
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
85.1
0.79
0.7
84.5
30.4
Minor 5ss
32.7
-2
3.1
37.9
40.9
Minor BPS
56.9
0.21
1.7
64.26
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024097
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034939
14561383 - 14589440
28058
ENSAPLT00000033322
14561383 - 14589440
28058
ENSAPLT00000020549
14531249 - 14589440
58192