About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_14664479_14715364_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14664479 - 14715364
Intron Length:
50886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTACGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTCTTTTACG
Flanking Amino Acid:
EITLDPPPNCSAGPKGDNIY
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
83.1
28.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.3
0.75
0.8
80.6
30.3
Minor 5ss
42.1
-0.9
2.5
53.5
43.9
Minor BPS
67.1
0.39
1.7
71.11
42.2

Associated Gene:

Gene:
UBE2E3
Ensembl Gene ID:
ENSAPLG00000011305
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011778
14660130 - 14719110
58981