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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1467860_1468874_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1467860 - 1468874
Intron Length:
1015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
GTTTTTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CATTTTATAGCT
Flanking Amino Acid:
DNPDVTDAKGQTPLMLAVAY
Intron Amino Acid Position:
678

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
82
32.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.9
0.79
0.7
77.9
36.6
Minor 5ss
48.3
-0.1
2.8
72.9
37.4
Minor BPS
49.2
0.02
1.8
69.36
41.8

Associated Gene:

Gene:
ANKRD44
Ensembl Gene ID:
ENSAPLG00000002803
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002945
1355915 - 1480169
124255
ENSAPLT00000040279
1381533 - 1480169
98637
ENSAPLT00000028198
1355915 - 1480169
124255
ENSAPLT00000023352
1355915 - 1478901
122987
ENSAPLT00000019319
1365255 - 1478901
113647