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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1469749_1470517_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1469749 - 1470517
Intron Length:
769

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TGATTTCTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
CTTTGTGTAACA
Flanking Amino Acid:
YTPLHWACYNGHENCIEVLL
Intron Amino Acid Position:
790

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.8
80.5
34.9
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
78.6
0.64
0.9
73.3
37
Minor 5ss
44
-0.7
2.8
55.1
43.4
Minor BPS
49.8
-0
2.4
70.26
42.8

Associated Gene:

Gene:
ANKRD44
Ensembl Gene ID:
ENSAPLG00000002803
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028198
1355915 - 1480169
124255
ENSAPLT00000023352
1355915 - 1478901
122987
ENSAPLT00000019319
1365255 - 1478901
113647
ENSAPLT00000002945
1355915 - 1480169
124255
ENSAPLT00000040279
1381533 - 1480169
98637