About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_14728331_14737782_F

Intron Information:

Intron Rank:
137824
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
14728331 - 14737782
Intron Length:
9452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTAT
5'SS Class:
strong_major
3'SS Sequence:
GAATTGAACCTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
ACTCCTGGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
76.7
34.9
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
50.7
0.02
1
41.1
42.7
Minor 5ss
55.7
0.19
2.5
72.7
44.5
Minor BPS
47.8
-0
2.1
68.49
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024224
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042146
14726355 - 14737985
11631