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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1475271_1476301_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1475271 - 1476301
Intron Length:
1031

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TAAACTTTAATT
Flanking Amino Acid:
LINAKNNALQTPLHIAARNG
Intron Amino Acid Position:
951

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1.2
87.1
30
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
88.5
0.87
0.7
84.9
29.9
Minor 5ss
40.7
-1
2.8
50.6
39.2
Minor BPS
71
0.74
1.2
78.91
37.1

Associated Gene:

Gene:
ANKRD44
Ensembl Gene ID:
ENSAPLG00000002803
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023352
1355915 - 1478901
122987
ENSAPLT00000019319
1365255 - 1478901
113647
ENSAPLT00000002945
1355915 - 1480169
124255
ENSAPLT00000040279
1381533 - 1480169
98637
ENSAPLT00000028198
1355915 - 1480169
124255