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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1491317_1491798_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1491317 - 1491798
Intron Length:
482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCCTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TGAAACTGAACT
Flanking Amino Acid:
CIKVILKLYRDREFAPSSVA
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.9
84.4
33.5
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
75
0.56
1
79.3
26.8
Minor 5ss
37.9
-1.4
2.7
44.7
42.7
Minor BPS
55.9
0.26
1.7
73.32
42.2

Associated Gene:

Gene:
PGAP1
Ensembl Gene ID:
ENSAPLG00000001884
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002050
1483555 - 1514174
30620