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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1494791_1494959_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1494791 - 1494959
Intron Length:
169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCTAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTACTTATTC
Flanking Amino Acid:
WASTDHLSIVWCKELILATI
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
72.9
34.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
80.9
0.7
0.8
73.5
37.1
Minor 5ss
43.3
-0.7
2.9
52.2
46
Minor BPS
66.5
0.5
1.8
79.36
36

Associated Gene:

Gene:
PGAP1
Ensembl Gene ID:
ENSAPLG00000001884
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002050
1483555 - 1514174
30620