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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1496520_1498171_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1496520 - 1498171
Intron Length:
1652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TTTCCTTCAGTG
Flanking Amino Acid:
ENPEAFTELTGDFTWIEVKT
Intron Amino Acid Position:
420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81.3
32.8
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
82.9
0.74
0.8
81.2
36.5
Minor 5ss
30.6
-2.2
2.6
36.7
40.4
Minor BPS
49.5
-0.1
1.8
61.06
41.3

Associated Gene:

Gene:
PGAP1
Ensembl Gene ID:
ENSAPLG00000001884
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002050
1483555 - 1514174
30620